MLOC_15147 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7279210.5702620.3982850.545656
LEAShoots from the seedlings (10 cm shoot stage)0.1042660.05857070.05038020.0587825
INF1Young developing inflorescences (5mm)1.211230.9376780.8666730.833273
INF2Developing inflorescences (1-1.5 cm)0.5606050.8003060.8585660.757175
ROORoots from the seedlings (10 cm shoot stage)0.06066380.5039190.6545180.484478
NODDeveloping tillers at six leaf stage, 3rd internode00.016606800.12568
CAR5Developing grain, bracts removed (5 DPA)0.2775820.4050820.6379830.395652
CAR15Developing grain, bracts removed (15 DPA)0.05285250.08892340.03784730.151265



CDS Structure of MLOC_15147






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15147.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15147.1CUST_9289_PI427708080AvailableAvailablecontig_1569975 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32730.1 +1 0.0 731 402/524 (77%) 13105.m03374 protein tetratricopeptide-like helical, putative, expressed
TAIR PP10 AT1G09900.1 +1 8e-57 203 126/411 (31%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=598