MLOC_15145 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.91049.380058.687449.66078
LEAShoots from the seedlings (10 cm shoot stage)5.23033.909484.222453.99211
INF1Young developing inflorescences (5mm)16.42317.010116.935314.5438
INF2Developing inflorescences (1-1.5 cm)18.183816.732215.651618.7017
ROORoots from the seedlings (10 cm shoot stage)5.907357.1993510.3529.18926
NODDeveloping tillers at six leaf stage, 3rd internode1.996353.196464.396311.8739
CAR5Developing grain, bracts removed (5 DPA)4.172474.437315.398844.61622
CAR15Developing grain, bracts removed (15 DPA)3.340042.690713.219367.07646



CDS Structure of MLOC_15145






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15145.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_15145.2CUST_9287_PI427708080AvailableAvailablecontig_1569973 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g59340.1 +3 1e-87 273 136/199 (68%) 13104.m06253 protein RNA-binding region RNP-1, putative, expressed
TAIR PP10 AT1G05970.2 +3 6e-48 167 80/190 (42%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:1816253-1816991 REVERSE LENGTH=200