MLOC_15072 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.805954.527674.975595.40646
LEAShoots from the seedlings (10 cm shoot stage)7.66876.9726910.52257.48569
INF1Young developing inflorescences (5mm)4.504875.252575.344544.52528
INF2Developing inflorescences (1-1.5 cm)5.207284.420355.620675.44985
ROORoots from the seedlings (10 cm shoot stage)17.802412.636212.756916.4546
NODDeveloping tillers at six leaf stage, 3rd internode11.127717.182615.518453.7228
CAR5Developing grain, bracts removed (5 DPA)7.087057.348678.176687.384
CAR15Developing grain, bracts removed (15 DPA)11.906710.659410.466526.7866



CDS Structure of MLOC_15072






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15072.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368503NoneNoneNoneNone
MLOC_15072.2CUST_1494_PI427708080AvailableAvailablecontig_1569752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g08320.1 +1 5e-167 473 223/245 (91%) 13104.m00749 protein YIF1B, putative, expressed
TAIR PP10 AT1G30890.2 +1 3e-126 368 169/243 (70%) Integral membrane HRF1 family protein | chr1:10994890-10995999 FORWARD LENGTH=269