MLOC_15027 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.040321.562820.474220.5193
LEAShoots from the seedlings (10 cm shoot stage)9.272673.895498.245896.473
INF1Young developing inflorescences (5mm)4.284785.068434.582043.95204
INF2Developing inflorescences (1-1.5 cm)5.810686.228516.404526.61545
ROORoots from the seedlings (10 cm shoot stage)15.766516.126712.535319.3923
NODDeveloping tillers at six leaf stage, 3rd internode11.920113.09996.963740.6038
CAR5Developing grain, bracts removed (5 DPA)6.720265.873057.248546.29549
CAR15Developing grain, bracts removed (15 DPA)1.022051.320681.343732.71754



CDS Structure of MLOC_15027






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15027.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353607NoneNoneNoneNone
MLOC_15027.2CUST_1489_PI427708080AvailableAvailablecontig_1569647 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38920.2 -3 0.0 930 431/521 (83%) 13112.m04023 protein heparanase-like protein precursor, putative, expressed
TAIR PP10 AT5G07830.1 -3 0.0 684 313/522 (60%) | Symbols: AtGUS2, GUS2 | glucuronidase 2 | chr5:2504168-2506567 FORWARD LENGTH=543