MLOC_15024 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains41.52841.62943.126544.5995
LEAShoots from the seedlings (10 cm shoot stage)8.008214.352146.702685.57961
INF1Young developing inflorescences (5mm)23.592323.725621.138920.4044
INF2Developing inflorescences (1-1.5 cm)21.811423.770920.216125.6766
ROORoots from the seedlings (10 cm shoot stage)30.745228.184326.788135.6331
NODDeveloping tillers at six leaf stage, 3rd internode7.461015.939161.5159816.6601
CAR5Developing grain, bracts removed (5 DPA)42.57141.511642.117843.1112
CAR15Developing grain, bracts removed (15 DPA)20.216320.235916.620247.4382



CDS Structure of MLOC_15024






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_15024.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362970NoneNoneNoneNone
MLOC_15024.1CUST_1488_PI427708080AvailableAvailablecontig_1569645 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g49520.1 +3 0.0 1839 935/1018 (92%) 13107.m05330 protein 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
TAIR PP10 AT3G55410.1 +3 0.0 1672 816/962 (85%) 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017