MLOC_1444 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.1385422.685619.502617.312
LEAShoots from the seedlings (10 cm shoot stage)21.004630.264718.749120.3824
INF1Young developing inflorescences (5mm)34.850430.56129.36426.2674
INF2Developing inflorescences (1-1.5 cm)35.98327.545230.280833.4992
ROORoots from the seedlings (10 cm shoot stage)5.6294210.70059.4921312.6592
NODDeveloping tillers at six leaf stage, 3rd internode7.291445.811896.2832421.4826
CAR5Developing grain, bracts removed (5 DPA)26.214122.176423.178322.8873
CAR15Developing grain, bracts removed (15 DPA)28.439827.680123.77261.3304



CDS Structure of MLOC_1444






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1444.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1444.1CUST_9217_PI427708080AvailableAvailablecontig_112714 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37720.1 +2 0.0 896 476/550 (87%) 13112.m03883 protein zinc knuckle family protein, expressed
TAIR PP10 AT5G49930.1 +2 0.0 660 367/550 (67%) | Symbols: emb1441 | zinc knuckle (CCHC-type) family protein | chr5:20308260-20312736 REVERSE LENGTH=1080