MLOC_1425 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.678931.463327.926338.9
LEAShoots from the seedlings (10 cm shoot stage)10.78431.019051.343633.99148
INF1Young developing inflorescences (5mm)65.182460.046266.615770.6233
INF2Developing inflorescences (1-1.5 cm)60.450171.321162.770994.7173
ROORoots from the seedlings (10 cm shoot stage)16.704818.221720.214528.5097
NODDeveloping tillers at six leaf stage, 3rd internode0.5042430.4169470.92371.86273
CAR5Developing grain, bracts removed (5 DPA)21.085118.870713.35522.3011
CAR15Developing grain, bracts removed (15 DPA)1.25810.7198641.496413.45931



CDS Structure of MLOC_1425






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1425.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1425.1CUST_2097_PI427708083AvailableAvailablecontig_112388 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 +3 2e-34 117 61/68 (90%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59970.1 +3 1e-34 117 61/68 (90%) Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103