MLOC_14236 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains77.168457.53659.455569.9802
LEAShoots from the seedlings (10 cm shoot stage)47.233630.648233.502732.3669
INF1Young developing inflorescences (5mm)130.397133.905135.766125.006
INF2Developing inflorescences (1-1.5 cm)115.102126.452140.43146.737
ROORoots from the seedlings (10 cm shoot stage)72.031573.244175.606395.8142
NODDeveloping tillers at six leaf stage, 3rd internode28.95338.463856.9355119.73
CAR5Developing grain, bracts removed (5 DPA)71.834170.488463.202773.4227
CAR15Developing grain, bracts removed (15 DPA)48.144643.775150.041117.707



CDS Structure of MLOC_14236






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_14236.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250511.1NoneNoneNoneNone
MLOC_14236.4CUST_1402_PI427708080AvailableAvailablecontig_1567621 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15310.1 +1 5e-84 262 163/212 (77%) 13102.m01708 protein RNA recognition motif containing protein, expressed
TAIR PP10 AT3G55460.1 +1 1e-43 155 94/196 (48%) | Symbols: SCL30, At-SCL30 | SC35-like splicing factor 30 | chr3:20561024-20563502 FORWARD LENGTH=262