MLOC_14205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains259.006179.714197.423207.304
LEAShoots from the seedlings (10 cm shoot stage)110.115182.412235.363140.257
INF1Young developing inflorescences (5mm)108.46998.919486.996187.023
INF2Developing inflorescences (1-1.5 cm)85.781987.938283.9463102.214
ROORoots from the seedlings (10 cm shoot stage)370.645231.507245.29288.322
NODDeveloping tillers at six leaf stage, 3rd internode134.191105.924121.61280.557
CAR5Developing grain, bracts removed (5 DPA)164.99187.41174.562190.84
CAR15Developing grain, bracts removed (15 DPA)46.844452.913644.8329124.531



CDS Structure of MLOC_14205






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_14205.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357073NoneNoneNoneNone
MLOC_14205.1CUST_17920_PI427708080AvailableAvailablecontig_1567541 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g23440.1 -3 8e-70 223 121/127 (95%) 13106.m02522 protein eukaryotic translation initiation factor 1A, putative, expressed
TAIR PP10 AT2G04520.1 -3 2e-62 203 102/128 (80%) Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145