MLOC_14192 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.186618.074418.728817.46064
LEAShoots from the seedlings (10 cm shoot stage)14.316711.65213.496911.1243
INF1Young developing inflorescences (5mm)7.114217.414017.835966.02056
INF2Developing inflorescences (1-1.5 cm)12.38269.2946311.659811.5526
ROORoots from the seedlings (10 cm shoot stage)5.275087.320288.918168.36175
NODDeveloping tillers at six leaf stage, 3rd internode9.621618.4460615.314931.3297
CAR5Developing grain, bracts removed (5 DPA)15.876317.75319.90416.7905
CAR15Developing grain, bracts removed (15 DPA)4.050334.209774.528329.30936



CDS Structure of MLOC_14192






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_14192.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249229.1NoneNoneNoneNone
MLOC_14192.4CUST_1393_PI427708080AvailableAvailablecontig_1567498 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g06050.1 +3 0.0 590 314/376 (84%) 13108.m00601 protein OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
TAIR PP10 AT1G63990.1 +3 1e-149 446 236/373 (63%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383