MLOC_14078 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains76.135564.863677.665670.0111
LEAShoots from the seedlings (10 cm shoot stage)31.466134.707437.189227.8791
INF1Young developing inflorescences (5mm)48.029655.368457.859145.6967
INF2Developing inflorescences (1-1.5 cm)39.732336.66139.75142.9069
ROORoots from the seedlings (10 cm shoot stage)66.048552.474376.05567.3587
NODDeveloping tillers at six leaf stage, 3rd internode41.748726.192235.773880.2262
CAR5Developing grain, bracts removed (5 DPA)30.329436.019230.289633.1576
CAR15Developing grain, bracts removed (15 DPA)7.043635.557344.930714.9178



CDS Structure of MLOC_14078






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_14078.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361590NoneNoneNoneNone
MLOC_14078.1CUST_1379_PI427708080AvailableAvailablecontig_1567203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g19400.1 +3 8e-44 146 92/108 (85%) 13101.m02109 protein expressed protein
TAIR PP10 AT5G26800.1 +3 1e-22 91 55/80 (69%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9425224-9426485 FORWARD LENGTH=112