MLOC_14017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.891918.575117.205715.9771
LEAShoots from the seedlings (10 cm shoot stage)31.372142.380940.099831.738
INF1Young developing inflorescences (5mm)13.499113.230514.812711.1923
INF2Developing inflorescences (1-1.5 cm)18.087117.792217.572218.9751
ROORoots from the seedlings (10 cm shoot stage)20.066521.970123.121526.1239
NODDeveloping tillers at six leaf stage, 3rd internode20.44624.734215.41775.8063
CAR5Developing grain, bracts removed (5 DPA)2.860222.607062.871392.60403
CAR15Developing grain, bracts removed (15 DPA)7.190967.248676.7219115.6715



CDS Structure of MLOC_14017






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_14017.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364810NoneNoneNoneNone
MLOC_14017.2CUST_1372_PI427708080AvailableAvailablecontig_1567050 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g42420.3 +3 0.0 790 484/720 (67%) 13108.m04568 protein expressed protein
TAIR PP10 AT3G26890.5 +3 2e-70 249 252/734 (34%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9907456-9910463 REVERSE LENGTH=649