MLOC_1400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0627187000.0441682
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.041260200.0710156
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)38.504537.075333.644438.2518
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_1400






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1400.1CUST_2072_PI427708083AvailableAvailablecontig_11217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73220.1 +3 4e-87 270 137/208 (66%) 13101.m07991 protein peroxidase precursor, putative, expressed
TAIR PP10 AT1G71695.1 +3 2e-64 210 105/193 (54%) Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358