MLOC_13970 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8509870.624980.2283470.589904
LEAShoots from the seedlings (10 cm shoot stage)00.08938610.0700430.11592
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0839255000.101245
ROORoots from the seedlings (10 cm shoot stage)00.048572500.213936
NODDeveloping tillers at six leaf stage, 3rd internode0.6860750.7213261.98812.98525
CAR5Developing grain, bracts removed (5 DPA)1.580531.549821.058211.23728
CAR15Developing grain, bracts removed (15 DPA)15.658414.461314.181729.9271



CDS Structure of MLOC_13970






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13970.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13970.2CUST_2068_PI427708083AvailableAvailablecontig_1566945 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17780.1 -2 8e-152 456 227/352 (64%) 13102.m01986 protein ent-kaurene synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT4G02780.1 -2 6e-55 195 130/369 (35%) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802