MLOC_13930 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.378814.864713.7713.0285
LEAShoots from the seedlings (10 cm shoot stage)12.908711.518111.181110.1828
INF1Young developing inflorescences (5mm)26.652224.08725.30620.1271
INF2Developing inflorescences (1-1.5 cm)18.338620.826119.494220.6208
ROORoots from the seedlings (10 cm shoot stage)4.6026413.19119.7040313.794
NODDeveloping tillers at six leaf stage, 3rd internode7.554977.155336.7626123.9677
CAR5Developing grain, bracts removed (5 DPA)19.629618.035918.030417.235
CAR15Developing grain, bracts removed (15 DPA)8.1679.120947.9024918.0526



CDS Structure of MLOC_13930






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13930.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13930.1CUST_9152_PI427708080AvailableAvailablecontig_156684 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05310.2 +1 0.0 837 426/620 (69%) 13105.m00551 protein Fibronectin type III domain containing protein, expressed
TAIR PP10 AT3G24440.1 +1 4e-128 402 237/598 (40%) | Symbols: VRN5, VIL1 | Fibronectin type III domain-containing protein | chr3:8876207-8878171 REVERSE LENGTH=602