- Predicted Gene MLOC_13886
MLOC_13886 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 10.5548 | 11.755 | 12.0642 | 9.49391 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 13.9458 | 10.8765 | 12.3439 | 9.17629 |
INF1 | Young developing inflorescences (5mm) | 31.5847 | 34.9856 | 36.642 | 23.7047 |
INF2 | Developing inflorescences (1-1.5 cm) | 45.3241 | 45.881 | 46.1626 | 41.7573 |
ROO | Roots from the seedlings (10 cm shoot stage) | 12.5021 | 15.2282 | 11.1544 | 13.7989 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.01845 | 9.92331 | 12.3304 | 28.9307 |
CAR5 | Developing grain, bracts removed (5 DPA) | 23.5401 | 21.8585 | 21.1436 | 17.3826 |
CAR15 | Developing grain, bracts removed (15 DPA) | 11.1421 | 9.4127 | 10.8158 | 19.4495 |
CDS Structure of MLOC_13886
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_13886.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g49992.1 |
+2 |
0.0 |
802 |
439/496 (89%) |
13102.m05678 protein expressed protein |
TAIR PP10 |
AT1G23230.2 |
+2 |
0.0 |
575 |
315/497 (63%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). | chr1:8244481-8251741 FORWARD LENGTH=1592 |