MLOC_13886 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.554811.75512.06429.49391
LEAShoots from the seedlings (10 cm shoot stage)13.945810.876512.34399.17629
INF1Young developing inflorescences (5mm)31.584734.985636.64223.7047
INF2Developing inflorescences (1-1.5 cm)45.324145.88146.162641.7573
ROORoots from the seedlings (10 cm shoot stage)12.502115.228211.154413.7989
NODDeveloping tillers at six leaf stage, 3rd internode6.018459.9233112.330428.9307
CAR5Developing grain, bracts removed (5 DPA)23.540121.858521.143617.3826
CAR15Developing grain, bracts removed (15 DPA)11.14219.412710.815819.4495



CDS Structure of MLOC_13886






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13886.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13886.1CUST_9146_PI427708080AvailableAvailablecontig_1566739 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49992.1 +2 0.0 802 439/496 (89%) 13102.m05678 protein expressed protein
TAIR PP10 AT1G23230.2 +2 0.0 575 315/497 (63%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). | chr1:8244481-8251741 FORWARD LENGTH=1592