MLOC_13871 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains377.011274.717315.695297.321
LEAShoots from the seedlings (10 cm shoot stage)123.304211.404281.196156.711
INF1Young developing inflorescences (5mm)1.214120.2666510.06442350.457236
INF2Developing inflorescences (1-1.5 cm)0.2581960.1523520.03171910.179697
ROORoots from the seedlings (10 cm shoot stage)1072.69472.206523.928573.808
NODDeveloping tillers at six leaf stage, 3rd internode254.925188.34665.4564399.047
CAR5Developing grain, bracts removed (5 DPA)5.774774.53974.748234.79072
CAR15Developing grain, bracts removed (15 DPA)1.888062.116141.395434.45397



CDS Structure of MLOC_13871






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13871.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250654.1NoneNoneNoneNone
MLOC_13871.1CUST_1354_PI427708080AvailableAvailablecontig_1566694 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g41860.2 -3 0.0 548 270/287 (94%) 13102.m04623 protein aquaporin protein, putative, expressed
TAIR PP10 AT3G53420.2 -3 5e-163 469 236/286 (83%) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287