MLOC_13772 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.140512.6253.009052.82462
LEAShoots from the seedlings (10 cm shoot stage)2.677440.997561.654421.49427
INF1Young developing inflorescences (5mm)0.535790.980290.897560.671891
INF2Developing inflorescences (1-1.5 cm)0.3120140.6704130.3570650.524576
ROORoots from the seedlings (10 cm shoot stage)7.139245.665316.930937.02371
NODDeveloping tillers at six leaf stage, 3rd internode9.5040410.69315.4322428.8095
CAR5Developing grain, bracts removed (5 DPA)2.434041.570962.114511.98929
CAR15Developing grain, bracts removed (15 DPA)0.4711850.1727930.6310320.935786



CDS Structure of MLOC_13772






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13772.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13772.1CUST_9132_PI427708080AvailableAvailablecontig_1566483 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39060.1 +2 4e-68 216 117/142 (82%) 13105.m04111 protein expressed protein
TAIR PP10 AT4G08330.1 +2 5e-30 115 71/134 (53%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:5255384-5256525 REVERSE LENGTH=164