MLOC_1377 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.076109300.130937
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)1.002410.6353370.3869580.674908
CAR15Developing grain, bracts removed (15 DPA)0.16035600.07887150.32967



CDS Structure of MLOC_1377






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1377.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1377.2CUST_9130_PI427708080AvailableAvailablecontig_112058 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g11130.1 -1 2e-13 67 27/46 (59%) 13104.m01008 protein DEF9 - Defensin and Defensin-like DEFL family, expressed
TAIR PP10 AT2G02120.1 -1 8e-12 62 26/44 (59%) | Symbols: PDF2.1, LCR70 | Scorpion toxin-like knottin superfamily protein | chr2:538319-538842 FORWARD LENGTH=77