MLOC_13742 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains327.278286.562288.852304.467
LEAShoots from the seedlings (10 cm shoot stage)141.442145.999178.805130.585
INF1Young developing inflorescences (5mm)98.0834128.345109.89697.3662
INF2Developing inflorescences (1-1.5 cm)57.259465.232262.849568.1829
ROORoots from the seedlings (10 cm shoot stage)348.38404.933399.041469.567
NODDeveloping tillers at six leaf stage, 3rd internode172.637173.508139.098547.033
CAR5Developing grain, bracts removed (5 DPA)331.255320.512304.837311.126
CAR15Developing grain, bracts removed (15 DPA)841.743795.139768.2141928.13



CDS Structure of MLOC_13742






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13742.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248697.1NoneNoneNoneNone
MLOC_13742.1CUST_1337_PI427708080AvailableAvailablecontig_1566402 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55540.1 +1 0.0 825 424/460 (92%) 13101.m05856 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT5G11520.1 +1 0.0 693 343/452 (76%) | Symbols: ASP3, YLS4 | aspartate aminotransferase 3 | chr5:3685257-3687721 REVERSE LENGTH=449