MLOC_13677 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.29213.161213.294114.6463
LEAShoots from the seedlings (10 cm shoot stage)7.721914.50413.431934.74832
INF1Young developing inflorescences (5mm)17.674217.380819.975816.3893
INF2Developing inflorescences (1-1.5 cm)21.758526.630526.308228.6818
ROORoots from the seedlings (10 cm shoot stage)6.329228.683257.8975310.8754
NODDeveloping tillers at six leaf stage, 3rd internode0.458330.5241460.2586641.65498
CAR5Developing grain, bracts removed (5 DPA)14.998215.915415.413915.9932
CAR15Developing grain, bracts removed (15 DPA)2.827032.02433.056096.28068



CDS Structure of MLOC_13677






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13677.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13677.1CUST_9115_PI427708080AvailableAvailablecontig_1566221 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g39600.1 +3 0.0 587 298/350 (85%) 13106.m04105 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT2G25620.1 +3 1e-149 435 228/347 (66%) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392