MLOC_13604 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.099930.588525.756124.2125
LEAShoots from the seedlings (10 cm shoot stage)58.978740.850543.343242.4206
INF1Young developing inflorescences (5mm)36.568825.892220.034823.2162
INF2Developing inflorescences (1-1.5 cm)18.420820.578517.705420.445
ROORoots from the seedlings (10 cm shoot stage)30.179155.12856.317163.7893
NODDeveloping tillers at six leaf stage, 3rd internode123.848100.17590.4726349.653
CAR5Developing grain, bracts removed (5 DPA)64.805154.79358.152855.4348
CAR15Developing grain, bracts removed (15 DPA)11.38169.4203111.215922.991



CDS Structure of MLOC_13604






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13604.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13604.1CUST_9106_PI427708080AvailableAvailablecontig_1566054 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48960.1 -3 0.0 3778 1939/2130 (91%) 13101.m05086 protein glutamate synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT5G53460.3 -3 0.0 3251 1648/2104 (78%) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208