MLOC_13593 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.601029.436138.652057.98097
LEAShoots from the seedlings (10 cm shoot stage)10.42459.3016912.80438.2985
INF1Young developing inflorescences (5mm)13.882816.661617.551313.286
INF2Developing inflorescences (1-1.5 cm)16.942116.776613.935917.4468
ROORoots from the seedlings (10 cm shoot stage)13.46019.004267.7364810.2392
NODDeveloping tillers at six leaf stage, 3rd internode8.4076613.041913.765735.6505
CAR5Developing grain, bracts removed (5 DPA)11.21839.984068.825239.67956
CAR15Developing grain, bracts removed (15 DPA)4.308834.362354.2467910.0884



CDS Structure of MLOC_13593






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13593.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13593.1CUST_9104_PI427708080AvailableAvailablecontig_1566027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g55560.2 -2 0.0 654 411/556 (74%) 13103.m06044 protein STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
TAIR PP10 AT5G66850.1 -2 1e-86 289 149/238 (63%) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716