MLOC_13565 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains198.708216.528208.898222.343
LEAShoots from the seedlings (10 cm shoot stage)117.90790.212481.510587.2848
INF1Young developing inflorescences (5mm)367.09352.582322.785299.84
INF2Developing inflorescences (1-1.5 cm)228.511257.989241.91273.504
ROORoots from the seedlings (10 cm shoot stage)100.275164.635152.116208.676
NODDeveloping tillers at six leaf stage, 3rd internode42.319737.988967.348160.314
CAR5Developing grain, bracts removed (5 DPA)234.508230.418244.997239.781
CAR15Developing grain, bracts removed (15 DPA)70.12572.282160.6389158.571



CDS Structure of MLOC_13565






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13565.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249539.1NoneNoneNoneNone
MLOC_13565.1CUST_1312_PI427708080AvailableAvailablecontig_1565931 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28280.1 +1 0.0 634 349/390 (89%) 13105.m02911 protein peptidase, M24 family protein, putative, expressed
TAIR PP10 AT3G51800.1 +1 0.0 539 302/393 (77%) | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=392