MLOC_13552 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.976319.024911.539421.9214
LEAShoots from the seedlings (10 cm shoot stage)4.519995.077064.16574.56923
INF1Young developing inflorescences (5mm)16.760322.172215.969919.8366
INF2Developing inflorescences (1-1.5 cm)79.442181.699588.6314110.31
ROORoots from the seedlings (10 cm shoot stage)10.284913.998812.976220.0228
NODDeveloping tillers at six leaf stage, 3rd internode1.392341.447741.210337.78836
CAR5Developing grain, bracts removed (5 DPA)22.665424.47623.521328.578
CAR15Developing grain, bracts removed (15 DPA)3.420283.277612.631479.1936



CDS Structure of MLOC_13552






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13552.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13552.1NoneAvailableAvailablecontig_1565906 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39500.1 +2 3e-14 67 34/35 (97%) 13109.m03961 protein ubiquitin fusion protein, putative, expressed
TAIR PP10 AT3G52590.1 +2 2e-14 67 34/35 (97%) | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin extension protein 1 | chr3:19505668-19506681 FORWARD LENGTH=128