MLOC_13551 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1755020.1770540.3284010.208443
LEAShoots from the seedlings (10 cm shoot stage)0.2581830.09512370.04166160.115951
INF1Young developing inflorescences (5mm)0.1109190.07344990.1424440.087385
INF2Developing inflorescences (1-1.5 cm)0.323130.1339520.2081210.238485
ROORoots from the seedlings (10 cm shoot stage)0.2537880.4937810.3898520.509598
NODDeveloping tillers at six leaf stage, 3rd internode0.04176750.01943580.05969380.0851715
CAR5Developing grain, bracts removed (5 DPA)0.997780.6838091.087330.85732
CAR15Developing grain, bracts removed (15 DPA)0.8584541.016590.9257952.13703



CDS Structure of MLOC_13551






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13551.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13551.2CUST_9098_PI427708080AvailableAvailablecontig_1565905 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g09640.1 -3 2e-53 163 102/268 (38%) 13111.m01013 protein OsFBX408 - F-box domain containing protein, expressed
TAIR PP10 AT3G59190.1 -3 1e-15 80 84/247 (34%) F-box/RNI-like superfamily protein | chr3:21884740-21886101 FORWARD LENGTH=388