MLOC_13514 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07375270.1234670.3267660.144624
LEAShoots from the seedlings (10 cm shoot stage)0.1215490.05158460.04476360.0633851
INF1Young developing inflorescences (5mm)0.06547270.068657300.060879
INF2Developing inflorescences (1-1.5 cm)0.09167980.08690790.01541170.0770358
ROORoots from the seedlings (10 cm shoot stage)0.107460.1561870.1370730.165124
NODDeveloping tillers at six leaf stage, 3rd internode0.072385200.02480840.0254456
CAR5Developing grain, bracts removed (5 DPA)11.338513.960112.412311.416
CAR15Developing grain, bracts removed (15 DPA)595.271682.587595.8421345.25



CDS Structure of MLOC_13514






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13514.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13514.1CUST_2020_PI427708083AvailableAvailablecontig_1565848 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47410.2 +3 0.0 570 268/370 (72%) 13101.m04889 protein aspartic proteinase oryzasin-1 precursor, putative, expressed
TAIR PP10 AT1G11910.1 +3 3e-163 501 234/370 (63%) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506