MLOC_13505 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.728611.993811.961210.0621
LEAShoots from the seedlings (10 cm shoot stage)7.507646.347526.702724.75145
INF1Young developing inflorescences (5mm)28.239731.476335.378919.6333
INF2Developing inflorescences (1-1.5 cm)22.593723.919326.212919.8894
ROORoots from the seedlings (10 cm shoot stage)15.754812.479718.715312.4711
NODDeveloping tillers at six leaf stage, 3rd internode2.25993.06699.8100211.3255
CAR5Developing grain, bracts removed (5 DPA)18.218119.184420.03113.5409
CAR15Developing grain, bracts removed (15 DPA)6.813586.313025.6220910.9087



CDS Structure of MLOC_13505






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13505.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13505.1CUST_9094_PI427708080AvailableAvailablecontig_1565826 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08810.1 +2 2e-36 137 61/77 (79%) 13103.m01019 protein expressed protein
TAIR PP10 AT5G62440.1 +2 3e-28 113 49/78 (63%) Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202