MLOC_13467 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.601955.655056.306144.28247
LEAShoots from the seedlings (10 cm shoot stage)4.202453.912176.920243.27063
INF1Young developing inflorescences (5mm)2.241173.792152.520861.6436
INF2Developing inflorescences (1-1.5 cm)2.788882.915482.698892.30454
ROORoots from the seedlings (10 cm shoot stage)5.444975.05058.880584.88119
NODDeveloping tillers at six leaf stage, 3rd internode3.811884.460934.5386911.9379
CAR5Developing grain, bracts removed (5 DPA)4.229234.534794.575073.0817
CAR15Developing grain, bracts removed (15 DPA)1.620172.286282.368392.99051



CDS Structure of MLOC_13467






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13467.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13467.1NoneAvailableAvailablecontig_1565745 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g03440.1 +2 2e-64 220 122/137 (89%) 13108.m00306 protein actin, putative, expressed
TAIR PP10 AT1G13180.1 +2 2e-47 173 94/139 (68%) | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase superfamily protein | chr1:4495394-4498204 FORWARD LENGTH=427