MLOC_13465 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.408549.541818.900967.12393
LEAShoots from the seedlings (10 cm shoot stage)12.10149.350666.694927.65777
INF1Young developing inflorescences (5mm)23.866720.521523.400816.9406
INF2Developing inflorescences (1-1.5 cm)33.073123.897628.782128.6114
ROORoots from the seedlings (10 cm shoot stage)5.3310110.192212.393910.7326
NODDeveloping tillers at six leaf stage, 3rd internode4.598033.401734.8329111.8367
CAR5Developing grain, bracts removed (5 DPA)9.420098.4718.5657.82352
CAR15Developing grain, bracts removed (15 DPA)10.92798.845798.7146219.7846



CDS Structure of MLOC_13465






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13465.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13465.1CUST_11384_PI427708083AvailableAvailablecontig_1565740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05830.1 -1 9e-27 116 56/63 (89%) 13103.m00634 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10 AT5G09880.1 -1 2e-24 107 52/63 (83%) Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527