MLOC_13456 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.506724.943834.231734.42159
LEAShoots from the seedlings (10 cm shoot stage)7.538978.380716.707896.3132
INF1Young developing inflorescences (5mm)9.4655210.66411.68868.06245
INF2Developing inflorescences (1-1.5 cm)8.285259.953759.647119.64661
ROORoots from the seedlings (10 cm shoot stage)1.657783.489633.728663.81875
NODDeveloping tillers at six leaf stage, 3rd internode4.007993.644115.0628413.249
CAR5Developing grain, bracts removed (5 DPA)3.829253.794484.055923.57145
CAR15Developing grain, bracts removed (15 DPA)0.530290.5322640.4148161.0734



CDS Structure of MLOC_13456






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13456.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13456.1CUST_9085_PI427708080AvailableAvailablecontig_1565693 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g16660.2 +2 8e-120 363 196/230 (85%) 13102.m01866 protein cbxX, chromosomal, putative, expressed
TAIR PP10 AT3G24530.1 +2 4e-103 323 172/229 (75%) AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945678-8947786 REVERSE LENGTH=481