MLOC_13452 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8920911.243560.7885030.84344
LEAShoots from the seedlings (10 cm shoot stage)1.392740.5258993.163281.16268
INF1Young developing inflorescences (5mm)1.137490.9293821.243970.783377
INF2Developing inflorescences (1-1.5 cm)0.5698590.9151441.009720.761241
ROORoots from the seedlings (10 cm shoot stage)1.837840.9033662.310951.11539
NODDeveloping tillers at six leaf stage, 3rd internode0.6253840.6922241.210091.8475
CAR5Developing grain, bracts removed (5 DPA)0.5819040.7869580.6933180.572362
CAR15Developing grain, bracts removed (15 DPA)0.4614590.3605380.2865860.769863



CDS Structure of MLOC_13452






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13452.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13452.1CUST_9084_PI427708080AvailableAvailablecontig_1565678 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64760.1 -1 4e-113 334 182/217 (84%) 13101.m06980 protein Yip1 domain containing protein, expressed
TAIR PP10 AT4G30260.1 -1 1e-108 322 174/205 (85%) Integral membrane Yip1 family protein | chr4:14816890-14818722 REVERSE LENGTH=280