- Predicted Gene MLOC_13446
MLOC_13446 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 8.28384 | 6.3455 | 7.25221 | 9.08957 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 7.36075 | 3.90467 | 5.01569 | 5.2298 |
| INF1 | Young developing inflorescences (5mm) | 17.1189 | 18.0263 | 17.5977 | 18.0229 |
| INF2 | Developing inflorescences (1-1.5 cm) | 22.2788 | 21.2766 | 23.8245 | 29.2669 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 11.2325 | 9.56735 | 10.5418 | 15.9578 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.33452 | 6.71039 | 7.54727 | 26.2375 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 13.3692 | 12.2215 | 13.6668 | 15.9193 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.86044 | 5.59752 | 5.33823 | 14.9435 |
CDS Structure of MLOC_13446
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_13446.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g17770.1 |
+1 |
1e-81 |
267 |
183/327 (56%) |
13110.m01457 protein chromo domain-containing protein LHP1, putative, expressed |
| TAIR PP10 |
AT5G17690.1 |
+1 |
3e-38 |
147 |
122/383 (32%) |
| Symbols: TFL2, LHP1 | like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445 |
