MLOC_13441 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.62921.565720.731318.0887
LEAShoots from the seedlings (10 cm shoot stage)22.861419.186513.60316.1751
INF1Young developing inflorescences (5mm)24.397125.149231.107221.075
INF2Developing inflorescences (1-1.5 cm)44.492640.256140.546644.2653
ROORoots from the seedlings (10 cm shoot stage)11.141620.832816.025123.5713
NODDeveloping tillers at six leaf stage, 3rd internode14.452314.954916.876653.8787
CAR5Developing grain, bracts removed (5 DPA)9.769649.1914110.45889.14605
CAR15Developing grain, bracts removed (15 DPA)5.019653.916454.497389.76295



CDS Structure of MLOC_13441






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13441.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366465NoneNoneNoneNone
MLOC_13441.2CUST_1296_PI427708080AvailableAvailablecontig_1565657 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g11960.1 +1 0.0 671 359/516 (70%) 13111.m01266 protein disease resistance protein RPM1, putative, expressed
TAIR PP10 AT3G07040.1 +1 9e-53 201 148/483 (31%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926