- Predicted Gene MLOC_13440
MLOC_13440 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 28.1532 | 21.7615 | 22.1843 | 25.473 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 16.4369 | 11.6511 | 15.7856 | 13.3766 |
| INF1 | Young developing inflorescences (5mm) | 11.1205 | 11.9661 | 11.8177 | 10.9624 |
| INF2 | Developing inflorescences (1-1.5 cm) | 11.9838 | 12.9801 | 11.8085 | 14.8691 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 26.6309 | 17.2824 | 16.2213 | 24.9763 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 16.6746 | 27.9383 | 17.2081 | 91.6517 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 21.3196 | 23.1939 | 18.9816 | 23.4872 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.94982 | 7.63029 | 6.75056 | 18.7992 |
CDS Structure of MLOC_13440
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_13440.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os08g34190.1 |
+3 |
2e-123 |
360 |
169/196 (86%) |
13108.m03576 protein stromal cell-derived factor 2-like protein precursor, putative, expressed |
| TAIR PP10 |
AT2G25110.1 |
+3 |
1e-101 |
304 |
134/191 (70%) |
| Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derived factor 2-like protein precursor | chr2:10684428-10685838 FORWARD LENGTH=218 |
