MLOC_13434 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4684850.4735240.7510690.588606
LEAShoots from the seedlings (10 cm shoot stage)0.2466280.06503530.05577780.115166
INF1Young developing inflorescences (5mm)0.1324450.2267230.145680.156934
INF2Developing inflorescences (1-1.5 cm)0.238830.1927320.1569110.235159
ROORoots from the seedlings (10 cm shoot stage)0.138040.1728120.2861880.247742
NODDeveloping tillers at six leaf stage, 3rd internode0.2529480.1671750.6357030.883831
CAR5Developing grain, bracts removed (5 DPA)0.3139210.2243940.0564130.218541
CAR15Developing grain, bracts removed (15 DPA)410.338481.26429.4361089.76



CDS Structure of MLOC_13434






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13434.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373857NoneNoneNoneNone
MLOC_13434.5CUST_1294_PI427708080AvailableAvailablecontig_1565643 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g41950.1 -2 0.0 694 370/496 (75%) 13105.m04462 protein protein kinase, putative, expressed
TAIR PP10 AT5G02800.1 -2 6e-147 441 208/325 (64%) Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378