MLOC_13417 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.530510.274210.402912.2124
LEAShoots from the seedlings (10 cm shoot stage)9.677676.159089.127078.08099
INF1Young developing inflorescences (5mm)24.803926.02525.312623.3528
INF2Developing inflorescences (1-1.5 cm)19.076525.153423.002427.6108
ROORoots from the seedlings (10 cm shoot stage)6.4242910.27067.4510914.0761
NODDeveloping tillers at six leaf stage, 3rd internode1.106272.122395.711379.94345
CAR5Developing grain, bracts removed (5 DPA)15.836214.789215.075717.0169
CAR15Developing grain, bracts removed (15 DPA)6.31676.063094.9515514.9294



CDS Structure of MLOC_13417






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13417.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368304NoneNoneNoneNone
MLOC_13417.3CUST_1292_PI427708080AvailableAvailablecontig_1565588 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54110.1 +2 1e-97 318 191/242 (79%) 13102.m06192 protein expressed protein
TAIR PP10 AT2G34357.1 +2 1e-35 140 107/253 (42%) ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280