MLOC_13414 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)00.67336900.655809
INF1Young developing inflorescences (5mm)0.137310.16041500.145357
INF2Developing inflorescences (1-1.5 cm)0.2154570.069107700.192089
ROORoots from the seedlings (10 cm shoot stage)00.1066200.476916
NODDeveloping tillers at six leaf stage, 3rd internode0.17446100.02540860.0238621
CAR5Developing grain, bracts removed (5 DPA)22.723931.400521.724627.3732
CAR15Developing grain, bracts removed (15 DPA)1214.421034.491026.082821.69



CDS Structure of MLOC_13414






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13414.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13414.1CUST_2008_PI427708083AvailableAvailablecontig_1565581 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47410.2 +3 5e-41 148 78/115 (68%) 13101.m04889 protein aspartic proteinase oryzasin-1 precursor, putative, expressed
TAIR PP10 AT1G62290.2 +3 9e-25 101 52/105 (50%) Saposin-like aspartyl protease family protein | chr1:23010107-23012681 REVERSE LENGTH=513