MLOC_13390 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.8179523.036819.635217.2027
LEAShoots from the seedlings (10 cm shoot stage)9.063311.052641.085843.40941
INF1Young developing inflorescences (5mm)89.443390.668184.991668.5406
INF2Developing inflorescences (1-1.5 cm)78.778899.626771.358189.0885
ROORoots from the seedlings (10 cm shoot stage)2.44289.538726.674179.54701
NODDeveloping tillers at six leaf stage, 3rd internode0.1398460.1797090.09677790.570501
CAR5Developing grain, bracts removed (5 DPA)23.301821.123823.235820.5596
CAR15Developing grain, bracts removed (15 DPA)2.981532.096552.979395.55291



CDS Structure of MLOC_13390






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13390.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13390.2CUST_9080_PI427708080AvailableAvailablecontig_1565521 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46540.1 +1 0.0 1941 1052/1279 (82%) 13107.m04913 protein condensin complex subunit 1, putative, expressed
TAIR PP10 AT3G57060.2 +1 0.0 1488 816/1305 (63%) binding | chr3:21115078-21121051 REVERSE LENGTH=1415