MLOC_13319 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.693611.563410.932912.3581
LEAShoots from the seedlings (10 cm shoot stage)4.611994.004624.70644.01652
INF1Young developing inflorescences (5mm)17.174617.288617.325614.9874
INF2Developing inflorescences (1-1.5 cm)13.177714.174114.224315.6872
ROORoots from the seedlings (10 cm shoot stage)7.4627310.37188.7709912.6791
NODDeveloping tillers at six leaf stage, 3rd internode1.891412.068371.3346.83552
CAR5Developing grain, bracts removed (5 DPA)11.689311.227511.271511.5653
CAR15Developing grain, bracts removed (15 DPA)2.456392.185642.226665.6165



CDS Structure of MLOC_13319






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13319.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250074.1NoneNoneNoneNone
MLOC_13319.1CUST_106_PI427708083AvailableAvailablecontig_1565359 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37510.1 +1 4e-165 473 235/254 (93%) 13111.m03671 protein ribosomal protein L4, putative, expressed
TAIR PP10 AT2G20060.1 +1 1e-128 380 184/246 (75%) Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300