MLOC_13316 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.146071.457881.257171.36813
LEAShoots from the seedlings (10 cm shoot stage)1.722211.393011.218681.24506
INF1Young developing inflorescences (5mm)2.767752.695182.914782.34607
INF2Developing inflorescences (1-1.5 cm)3.397343.406033.452373.80001
ROORoots from the seedlings (10 cm shoot stage)0.8266291.611181.54731.82353
NODDeveloping tillers at six leaf stage, 3rd internode0.2274120.2559020.6761751.10147
CAR5Developing grain, bracts removed (5 DPA)1.940872.439972.154322.19482
CAR15Developing grain, bracts removed (15 DPA)1.058140.8326440.6228722.09781



CDS Structure of MLOC_13316






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13316.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376798NoneNoneNoneNone
MLOC_13316.1CUST_1285_PI427708080AvailableAvailablecontig_1565349 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g40320.1 -2 1e-124 382 199/281 (71%) 13105.m04267 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT1G11900.1 -2 2e-50 182 109/282 (39%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4013166-4014630 REVERSE LENGTH=367