MLOC_13251 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.519183.044962.130071.91225
LEAShoots from the seedlings (10 cm shoot stage)2.112093.005712.856481.8709
INF1Young developing inflorescences (5mm)2.831972.510233.755731.94347
INF2Developing inflorescences (1-1.5 cm)4.431534.564223.837813.8528
ROORoots from the seedlings (10 cm shoot stage)2.847932.059692.63972.33669
NODDeveloping tillers at six leaf stage, 3rd internode1.589431.820351.587415.05157
CAR5Developing grain, bracts removed (5 DPA)3.678762.906863.625982.54421
CAR15Developing grain, bracts removed (15 DPA)2.142172.563961.896343.92143



CDS Structure of MLOC_13251






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13251.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13251.3CUST_11379_PI427708083AvailableAvailablecontig_1565217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07450.3 +2 9e-74 251 123/166 (74%) 13112.m00779 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT3G53390.1 +2 7e-61 216 102/166 (61%) Transducin/WD40 repeat-like superfamily protein | chr3:19792781-19796428 FORWARD LENGTH=558