MLOC_13213 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.946731.930233.96932.3591
LEAShoots from the seedlings (10 cm shoot stage)42.403618.17321.385323.2859
INF1Young developing inflorescences (5mm)28.895923.79819.809220.7911
INF2Developing inflorescences (1-1.5 cm)20.738125.574828.579326.8882
ROORoots from the seedlings (10 cm shoot stage)17.960424.803220.375827.5785
NODDeveloping tillers at six leaf stage, 3rd internode85.772693.45837.36265.137
CAR5Developing grain, bracts removed (5 DPA)19.69619.48719.00618.887
CAR15Developing grain, bracts removed (15 DPA)5.230654.469325.3880311.7871



CDS Structure of MLOC_13213






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13213.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365702NoneNoneNoneNone
MLOC_13213.1CUST_1276_PI427708080AvailableAvailablecontig_1565119 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61800.2 -1 0.0 767 403/476 (85%) 13103.m06810 protein polygalacturonase, putative, expressed
TAIR PP10 AT3G62110.1 -1 0.0 537 286/433 (66%) Pectin lyase-like superfamily protein | chr3:22997313-22999503 REVERSE LENGTH=471