MLOC_13188 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.190520.197121.592217.8536
LEAShoots from the seedlings (10 cm shoot stage)16.772415.648112.968411.2909
INF1Young developing inflorescences (5mm)32.208334.591134.327222.519
INF2Developing inflorescences (1-1.5 cm)29.959628.655530.838626.9927
ROORoots from the seedlings (10 cm shoot stage)19.240321.470420.092121.2929
NODDeveloping tillers at six leaf stage, 3rd internode4.848244.6448811.637217.1228
CAR5Developing grain, bracts removed (5 DPA)23.49822.543726.028218.7856
CAR15Developing grain, bracts removed (15 DPA)9.449768.088446.8804815.4307



CDS Structure of MLOC_13188






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13188.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13188.2CUST_9045_PI427708080AvailableAvailablecontig_1565075 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g02480.1 -2 2e-97 310 170/286 (59%) 13103.m00210 protein inner membrane protein, putative, expressed
TAIR PP10 AT5G62050.1 -2 3e-70 237 113/207 (55%) | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast oxidase assembly 1 (OXA1) | chr5:24924062-24926758 REVERSE LENGTH=429