MLOC_13180 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.766821.398626.408527.0299
LEAShoots from the seedlings (10 cm shoot stage)10.27823.166812.341344.63266
INF1Young developing inflorescences (5mm)49.549773.76276.171252.0576
INF2Developing inflorescences (1-1.5 cm)25.224835.689232.947733.8943
ROORoots from the seedlings (10 cm shoot stage)34.369117.725426.37323.1884
NODDeveloping tillers at six leaf stage, 3rd internode0.228340.4323050.5157451.46449
CAR5Developing grain, bracts removed (5 DPA)12.355812.996214.50912.5944
CAR15Developing grain, bracts removed (15 DPA)0.6230910.136470.1820420.920982



CDS Structure of MLOC_13180






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13180.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13180.1CUST_11378_PI427708083AvailableAvailablecontig_1565052 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g38300.1 +1 4e-29 107 55/56 (98%) 13108.m04061 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G22880.1 +1 5e-29 106 54/56 (96%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145