MLOC_1313 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.057218.050317.036316.6211
LEAShoots from the seedlings (10 cm shoot stage)17.953116.611118.737614.4785
INF1Young developing inflorescences (5mm)24.552524.881722.836518.7947
INF2Developing inflorescences (1-1.5 cm)22.542222.718422.400622.8723
ROORoots from the seedlings (10 cm shoot stage)13.342817.689211.666718.2729
NODDeveloping tillers at six leaf stage, 3rd internode9.6752217.799718.651755.8401
CAR5Developing grain, bracts removed (5 DPA)22.296823.409124.971620.8648
CAR15Developing grain, bracts removed (15 DPA)14.33713.746514.137329.1271



CDS Structure of MLOC_1313






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1313.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1313.1CUST_9035_PI427708080AvailableAvailablecontig_111510 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g27820.1 -2 0.0 677 428/638 (67%) 13103.m03253 protein expressed protein
TAIR PP10 AT3G50370.1 -2 3e-48 185 170/452 (38%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156