MLOC_13125 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.6370612.193610.881110.0355
LEAShoots from the seedlings (10 cm shoot stage)9.265325.948266.3435.8945
INF1Young developing inflorescences (5mm)25.298523.547222.303617.6415
INF2Developing inflorescences (1-1.5 cm)21.507222.109520.580721.0435
ROORoots from the seedlings (10 cm shoot stage)4.0752310.17538.802059.94974
NODDeveloping tillers at six leaf stage, 3rd internode1.280192.152194.964918.45766
CAR5Developing grain, bracts removed (5 DPA)11.751310.393111.07569.39064
CAR15Developing grain, bracts removed (15 DPA)7.065125.393454.4958911.8872



CDS Structure of MLOC_13125






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13125.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13125.1CUST_9034_PI427708080AvailableAvailablecontig_1564867 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g07290.2 -2 0.0 994 582/806 (72%) 13108.m00747 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT3G55160.1 -2 3e-131 438 322/805 (40%) unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr3:20445629-20452400 REVERSE LENGTH=2130