- Predicted Gene MLOC_13112
MLOC_13112 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_13112_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.04807 | 2.61585 | 3.06934 | 3.08142 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.29498 | 0 | 0.446728 | 0.938992 |
INF1 | Young developing inflorescences (5mm) | 8.97074 | 9.31474 | 10.4727 | 7.5226 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.96958 | 9.36758 | 8.83358 | 9.9376 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.13091 | 2.01882 | 2.45588 | 2.44765 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.190939 | 0.199639 | 0.38313 | 0.740021 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.35607 | 4.72758 | 5.04541 | 4.10498 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.32283 | 1.23775 | 0.986646 | 2.67804 |
CDS Structure of MLOC_13112
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_13112.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g74170.1 |
+2 |
3e-70 |
221 |
128/206 (62%) |
13101.m08104 protein expressed protein |
TAIR PP10 |
AT3G48210.1 |
+2 |
7e-24 |
97 |
47/120 (39%) |
CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:17849435-17851396 FORWARD LENGTH=315 |