MLOC_13112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.048072.615853.069343.08142
LEAShoots from the seedlings (10 cm shoot stage)1.2949800.4467280.938992
INF1Young developing inflorescences (5mm)8.970749.3147410.47277.5226
INF2Developing inflorescences (1-1.5 cm)8.969589.367588.833589.9376
ROORoots from the seedlings (10 cm shoot stage)1.130912.018822.455882.44765
NODDeveloping tillers at six leaf stage, 3rd internode0.1909390.1996390.383130.740021
CAR5Developing grain, bracts removed (5 DPA)3.356074.727585.045414.10498
CAR15Developing grain, bracts removed (15 DPA)1.322831.237750.9866462.67804



CDS Structure of MLOC_13112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13112.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_13112.2CUST_9031_PI427708080AvailableAvailablecontig_1564834 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74170.1 +2 3e-70 221 128/206 (62%) 13101.m08104 protein expressed protein
TAIR PP10 AT3G48210.1 +2 7e-24 97 47/120 (39%) CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:17849435-17851396 FORWARD LENGTH=315