MLOC_13086 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains753.99530.749503.383660.857
LEAShoots from the seedlings (10 cm shoot stage)228.886158.382204.329178.169
INF1Young developing inflorescences (5mm)731.271792.309784.546749.434
INF2Developing inflorescences (1-1.5 cm)565.365558.916536.633690.899
ROORoots from the seedlings (10 cm shoot stage)538.837468.579492.907648.913
NODDeveloping tillers at six leaf stage, 3rd internode37.697651.7483109.209199.019
CAR5Developing grain, bracts removed (5 DPA)312.965342.894311.305372.986
CAR15Developing grain, bracts removed (15 DPA)114.74114.63890.389287.255



CDS Structure of MLOC_13086






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_13086.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250676.1NoneNoneNoneNone
MLOC_13086.1CUST_1262_PI427708080AvailableAvailablecontig_1564762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39540.2 -1 3e-38 131 65/72 (90%) 13109.m03966 protein 40S ribosomal protein S25, putative, expressed
TAIR PP10 AT2G21580.2 -1 1e-33 119 58/72 (81%) Ribosomal protein S25 family protein | chr2:9236629-9237510 FORWARD LENGTH=107