MLOC_1297 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.304765.154567.576650.5243
LEAShoots from the seedlings (10 cm shoot stage)56.095530.311432.48131.238
INF1Young developing inflorescences (5mm)56.326458.755262.832940.2243
INF2Developing inflorescences (1-1.5 cm)49.663258.540153.405749.489
ROORoots from the seedlings (10 cm shoot stage)38.372152.488644.527750.0576
NODDeveloping tillers at six leaf stage, 3rd internode70.751364.7247.8757188.862
CAR5Developing grain, bracts removed (5 DPA)70.52465.68974.672755.2064
CAR15Developing grain, bracts removed (15 DPA)21.305220.471120.966538.0203



CDS Structure of MLOC_1297






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1297.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1297.1CUST_17556_PI427708080AvailableAvailablecontig_111355 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07090.2 +2 0.0 799 459/621 (74%) 13106.m00737 protein AP-1 complex subunit gamma-1, putative, expressed
TAIR PP10 AT1G23900.2 +2 0.0 624 365/630 (58%) | Symbols: GAMMA-ADAPTIN 1 | gamma-adaptin 1 | chr1:8441379-8447152 FORWARD LENGTH=876